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Table 2 Insertion and deletion observed in vir 12 and vir 21 genes

From: Genetic diversity and natural selection analysis of VAR2CSA and vir genes: implication for vaccine development

 

Insertion/deletion

Location

Length

(Nucleotides)

Sequences

Countries

Vir 12

Insertion

564

3

GAA / TAT / GGA

India, Myanmar and Korea

773

15

AAAACCTGCACCTGT

India and Myanmar

801

15

GCAAAACCTGTAGCG

India, Myanmar and Korea

801

30

GCAAAACCTGTAGCAGCAAAACCTGCAGAC

India and Myanmar

921

15

GCAAAACCTGTAGCG

India

Deletion

859

15

CGACAAAACCTGCAA

India and Myanmar

928

30

CTGTAGCGGCAAAACCAGCACCGGGAGAAG

India and Myanmar

Vir 21

Insertion

768

27

AGGGTTTCTGAAAAACCAAATATAAAT/

AAGTTATCTGAAAACCCAAATATAAAT

Myanmar

773

5

TTCTG/ ATCTG

Korea

Deletion

152

3

GGC

India and Myanmar

786

5

TTTCT

Korea

  1. Position number are given according to the coding sequences of Sal I reference strain accession number AAKM01000016 for vir 12 and AAKM01000003 for vir 21